Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11850961_11861641_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11850961 - 11861641

Intron Length:

10681

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCTC

5'SS Class:

strong_major

3'SS Sequence:

AATTTCTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

GTCTTATTAATT

Flanking Amino Acid:

IVPGDIVEVAVGDKVPADIR

Intron Amino Acid Position:

155

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

76.9

38.6

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

83.8

0.76

0.8

77.8

35.5

Minor 5ss

35.3

-1.7

3.4

50.1

46.5

Minor BPS

64.1

0.52

1.6

77.3

39.4

Associated Gene:

Gene:

ATP2A2

Ensembl Gene ID:

ENSAPLG00000004659

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004899

11835343 - 11873951

38609

ENSAPLT00000039620

11835343 - 11873951

38609