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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11861781_11864526_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11861781 - 11864526
Intron Length:
2746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TTTTCTGTATTT
Flanking Amino Acid:
VANAIVGVWQERNAENAIEA
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
70.6
41.3
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
79.7
0.67
0.8
78
35.1
Minor 5ss
44.8
-0.6
2.6
57.7
46.6
Minor BPS
56.4
0.28
2.2
83.14
39

Associated Gene:

Gene:
ATP2A2
Ensembl Gene ID:
ENSAPLG00000004659
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039620
11835343 - 11873951
38609
ENSAPLT00000004899
11835343 - 11873951
38609