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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11909964_11914870_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11909964 - 11914870
Intron Length:
4907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAATGGA
5'SS Class:
major
3'SS Sequence:
ATATTTCCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATATATT
Flanking Amino Acid:
PDPQERRKAIREQYTRMILE
Intron Amino Acid Position:
601

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.61
1
66.1
39.9
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
77.3
0.61
0.8
75.3
35
Minor 5ss
31.9
-2.1
3.3
40.3
45.9
Minor BPS
48.2
-0
2.2
73.86
42.8

Associated Gene:

Gene:
IFT81
Ensembl Gene ID:
ENSAPLG00000001267
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001452
11908782 - 11949860
41079