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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11914957_11915042_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11914957 - 11915042
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATCG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCATTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATATTTTTAAAA
Flanking Amino Acid:
NYRYVNCMKRNLEIQLQRAK
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
66
40.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.1
0.72
0.7
76.9
30.7
Minor 5ss
37.8
-1.4
3
40.7
45
Minor BPS
66.6
0.52
1.3
71.49
33.9

Associated Gene:

Gene:
IFT81
Ensembl Gene ID:
ENSAPLG00000001267
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001452
11908782 - 11949860
41079