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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11919292_11921302_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11919292 - 11921302
Intron Length:
2011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATACAG
5'SS Class:
major
3'SS Sequence:
TGTGTGTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAGAC
U12 Branch Point Sequence:
TCACACTCAGCC
Flanking Amino Acid:
QRHEAIQQQLQAIEDKKGIS
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
57.1
41.7
Major BPS
52.7
0.07
1
50.4
34.3
Major PPT
79.5
0.66
1
72.9
42.2
Minor 5ss
31.5
-2.1
3.1
36.4
41.6
Minor BPS
45
-0.4
1.9
54.55
42.7

Associated Gene:

Gene:
IFT81
Ensembl Gene ID:
ENSAPLG00000001267
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001452
11908782 - 11949860
41079