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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11921453_11929627_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11921453 - 11929627
Intron Length:
8175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTCTCTCTCATT
Flanking Amino Acid:
EGSEVLKGDEFKHYVNKLRS
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.7
35.4
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
82.3
0.73
0.8
73.8
35.4
Minor 5ss
47.1
-0.3
2.6
65.5
45.8
Minor BPS
51.2
0.12
2.1
75.83
41.7

Associated Gene:

Gene:
IFT81
Ensembl Gene ID:
ENSAPLG00000001267
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001452
11908782 - 11949860
41079