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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11929775_11931729_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11929775 - 11931729
Intron Length:
1955

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
AATATTCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTGTCCTTATAC
Flanking Amino Acid:
DSKFSMYRQQASIISRKKEA
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
70.3
0.46
1
63.5
42.1
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
66.3
0.49
1.7
75.7
40.6

Associated Gene:

Gene:
IFT81
Ensembl Gene ID:
ENSAPLG00000001267
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001452
11908782 - 11949860
41079