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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11934408_11941976_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11934408 - 11941976
Intron Length:
7569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTGATTTAATC
Flanking Amino Acid:
HHAVVDSKPESLMKKLEEEI
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
79
35.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
72
0.49
1.1
75.3
38.1
Minor 5ss
36.1
-1.6
3.3
49.5
41.2
Minor BPS
60.5
0.31
1.6
69.27
36.6

Associated Gene:

Gene:
IFT81
Ensembl Gene ID:
ENSAPLG00000001267
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001452
11908782 - 11949860
41079