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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11942062_11943337_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11942062 - 11943337
Intron Length:
1276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGACA
5'SS Class:
major
3'SS Sequence:
TGTGTCTCAAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
AATGAATTAACT
Flanking Amino Acid:
AQQKQEQKNQLFHAEQRLQR
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
66.9
38
Major BPS
77.3
0.68
1
81.5
27
Major PPT
60.3
0.23
1.1
61.1
39.4
Minor 5ss
38.7
-1.3
3
49.8
46.1
Minor BPS
54.7
0.23
1.9
74.29
41.7

Associated Gene:

Gene:
IFT81
Ensembl Gene ID:
ENSAPLG00000001267
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001452
11908782 - 11949860
41079