About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11942600_11943337_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11942600 - 11943337
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGACA
5'SS Class:
major
3'SS Sequence:
GTCTTTGCTTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTCAA
U12 Branch Point Sequence:
AGGGTTTCAAGC
Flanking Amino Acid:
AQQKQEQKNQGDHK*
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
66.9
38
Major BPS
73
0.57
1.2
77.7
37.1
Major PPT
57.4
0.17
1.7
69.2
41.8
Minor 5ss
38.7
-1.3
3
49.8
46.1
Minor BPS
42.2
-0.6
1.8
44.52
38

Associated Gene:

Gene:
IFT81
Ensembl Gene ID:
ENSAPLG00000001267
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039505
11942585 - 11949860
7276