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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11948113_11948794_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11948113 - 11948794
Intron Length:
682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TGTTTTTGTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
TGTTTTTGTATA
Flanking Amino Acid:
KYKPPGSVSDLSAFRQGLVT
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80
32.8
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
80
0.67
0.9
76.5
37.7
Minor 5ss
42.9
-0.8
2.8
60.8
37.7
Minor BPS
49
-0
1.7
63.99
36.9

Associated Gene:

Gene:
IFT81
Ensembl Gene ID:
ENSAPLG00000001267
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039505
11942585 - 11949860
7276
ENSAPLT00000001452
11908782 - 11949860
41079