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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11955581_11957180_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11955581 - 11957180
Intron Length:
1600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTAATCTGGCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTGTTTAATC
Flanking Amino Acid:
FIYVVIAIYICYTLIADKRY
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
64.1
0.32
1.2
58.3
47
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
64.8
0.44
1.7
73.34
38.7

Associated Gene:

Gene:
P2RX7
Ensembl Gene ID:
ENSAPLG00000002317
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002403
11955414 - 11970342
14929