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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11957314_11957872_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11957314 - 11957872
Intron Length:
559

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCATGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCATGTAGATT
Flanking Amino Acid:
DTAEYAIPMQSRDSFFVMTN
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.8
1.15
0.7
91.8
25.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75
0.56
0.8
70.4
29.4
Minor 5ss
29.8
-2.3
4.1
49.5
46.7
Minor BPS
42.5
-0.5
2.3
62.28
42.8

Associated Gene:

Gene:
P2RX7
Ensembl Gene ID:
ENSAPLG00000002317
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002403
11955414 - 11970342
14929