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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11957945_11958829_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11957945 - 11958829
Intron Length:
885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGTA
5'SS Class:
strong_major
3'SS Sequence:
GTCATTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCTGTCATT
Flanking Amino Acid:
ENQIQSRCPEAPFAKAICST
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
83.9
27.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83
0.74
0.9
80.3
37.1
Minor 5ss
35.6
-1.6
3.4
49
47.2
Minor BPS
53.6
0.19
2.4
82.98
39.3

Associated Gene:

Gene:
P2RX7
Ensembl Gene ID:
ENSAPLG00000002317
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002403
11955414 - 11970342
14929