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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11958903_11959871_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11958903 - 11959871
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
GTTTGCTGAATG
Flanking Amino Acid:
ENGSAYVHSNGVQTGRCVQY
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
75.9
35.2
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
82.8
0.74
0.8
76.4
32.3
Minor 5ss
33.8
-1.8
3
38.1
42.1
Minor BPS
55.5
0.04
2
65.07
42.9

Associated Gene:

Gene:
P2RX7
Ensembl Gene ID:
ENSAPLG00000002317
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002403
11955414 - 11970342
14929