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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11972459_11973106_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11972459 - 11973106
Intron Length:
648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCTGG
5'SS Class:
major
3'SS Sequence:
AAAAACAGGGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAAAAAC
U12 Branch Point Sequence:
ATTCCTAGGAGC
Flanking Amino Acid:
VQLAILAYVIGPSWSQEQRL
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
56.7
45
Major BPS
47.7
-0.1
1
51.4
28.5
Major PPT
46.4
-0.2
1.1
33.4
40.2
Minor 5ss
37.4
-1.4
3
38.2
46.7
Minor BPS
42.4
-0.6
1.9
55.19
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023147
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048035
11972327 - 11973173
847