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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11975274_11975749_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11975274 - 11975749
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAAAC
5'SS Class:
major
3'SS Sequence:
CTTGTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
GTGTCTCCATGT
Flanking Amino Acid:
VPGYVSTHSNGIQTGKCVNY
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
67.8
37.5
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
85.1
0.79
0.8
76.7
37.4
Minor 5ss
32.5
-2
3.2
39.7
40.4
Minor BPS
39.7
-0.7
2.2
57.34
45.3

Associated Gene:

Gene:
P2RX4
Ensembl Gene ID:
ENSAPLG00000002558
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019830
11973856 - 11978701
4846
ENSAPLT00000002605
11973856 - 11979327
5472