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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11978591_11979294_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11978591 - 11979294
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
CTGGTCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACGTAAT
U12 Branch Point Sequence:
ATAAACGTAATC
Flanking Amino Acid:
KYKYVEDYEMGDGETYGTDS
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.9
36.8
Major BPS
63
0.32
1.2
63.6
40.3
Major PPT
79
0.65
0.9
72.8
37.5
Minor 5ss
44.1
-0.6
2.9
58
40.8
Minor BPS
46.7
-0.2
2.1
59.61
39.2

Associated Gene:

Gene:
P2RX4
Ensembl Gene ID:
ENSAPLG00000002558
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002605
11973856 - 11979327
5472