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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11986960_11987041_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11986960 - 11987041
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAG
U12 Branch Point Sequence:
TGTTGCAGATCT
Flanking Amino Acid:
SETRKIFSGKALDVWAMGIT
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
81.6
31.4
Major BPS
58.6
0.21
1.5
57.1
41.8
Major PPT
81.5
0.71
0.7
76.7
25.3
Minor 5ss
43.6
-0.7
2.6
59.8
44.7
Minor BPS
44.7
-0.3
2.3
70.91
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003190
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003296
11983384 - 11990485
7102