About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11987242_11987344_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11987242 - 11987344
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
CCTTCGATCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATCAT
U12 Branch Point Sequence:
TTCCCTTCGATC
Flanking Amino Acid:
FQDLIKGIEYLHYQKIIHRD
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
59.1
39.9
Major BPS
63.3
0.33
1.2
65.6
39.7
Major PPT
71.8
0.49
0.9
65.2
34.8
Minor 5ss
30.5
-2.2
3.2
42.5
44.2
Minor BPS
51.7
0.04
1.5
62.95
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003190
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003296
11983384 - 11990485
7102