About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11987771_11988455_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11987771 - 11988455
Intron Length:
685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CATTGTCTAATT
Flanking Amino Acid:
DHPNVVKLVEVLDDPSEDHL
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
79.3
0.66
0.9
76.6
32
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
48.8
-0
2.1
69.2
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003190
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003296
11983384 - 11990485
7102