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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11997097_11997703_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11997097 - 11997703
Intron Length:
607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAGAC
U12 Branch Point Sequence:
GATTCCAGCATT
Flanking Amino Acid:
ETVLNLAFSQLILGIPEQAL
Intron Amino Acid Position:
620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
60.5
0.26
1
58.5
38.2
Major PPT
87.7
0.85
0.7
85.1
29.7
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
46.2
-0.2
2.1
68.2
42.2

Associated Gene:

Gene:
ANAPC5
Ensembl Gene ID:
ENSAPLG00000003505
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003634
11996311 - 12010894
14584