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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11997852_11998338_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11997852 - 11998338
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTGATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTTAT
U12 Branch Point Sequence:
TCTCTGTTGATT
Flanking Amino Acid:
QKIKNTEMVISVLLSIAELY
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
72.5
0.56
1.1
63.4
44
Major PPT
65.4
0.35
1
66
39.7
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
49.8
0.06
2.1
71.41
40.3

Associated Gene:

Gene:
ANAPC5
Ensembl Gene ID:
ENSAPLG00000003505
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003634
11996311 - 12010894
14584