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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11999750_12000507_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11999750 - 12000507
Intron Length:
758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAATAT
5'SS Class:
major
3'SS Sequence:
GTTCTTTGTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ACTTCTAAAACA
Flanking Amino Acid:
RFPPNSQHAQLWMLFDQKIQ
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
71
35.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
77.7
0.62
0.9
77.1
37.1
Minor 5ss
37.6
-1.4
3.5
55.2
49
Minor BPS
51.3
0.04
1.9
66.2
40.5

Associated Gene:

Gene:
ANAPC5
Ensembl Gene ID:
ENSAPLG00000003505
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003634
11996311 - 12010894
14584