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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12000583_12000815_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12000583 - 12000815
Intron Length:
233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTCTGTTACA
Flanking Amino Acid:
CHLAELHAEQGYFAAASEIL
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
88.8
0.87
0.8
83.7
31.3
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
57.4
0.23
2.3
78.96
37.6

Associated Gene:

Gene:
ANAPC5
Ensembl Gene ID:
ENSAPLG00000003505
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003634
11996311 - 12010894
14584