About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12001623_12002571_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12001623 - 12002571
Intron Length:
949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
CCCCTCTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCTTTTATGT
Flanking Amino Acid:
VNKSLHFGLPYLASLGIQSL
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.1
66
45.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
75.8
0.58
0.8
67.6
32.3
Minor 5ss
40.7
-1
3.1
60.3
43.9
Minor BPS
53.7
0.19
1.9
76.38
40.7

Associated Gene:

Gene:
ANAPC5
Ensembl Gene ID:
ENSAPLG00000003505
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003634
11996311 - 12010894
14584