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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12002662_12003358_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12002662 - 12003358
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTCCCTTACTA
Flanking Amino Acid:
NDHVCLQHCLSWLYILEQKI
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.4
36.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
76.4
0.59
0.8
70.9
34.6
Minor 5ss
37.4
-1.4
3
44.2
44.6
Minor BPS
71
0.65
1.6
80.77
35.1

Associated Gene:

Gene:
ANAPC5
Ensembl Gene ID:
ENSAPLG00000003505
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003634
11996311 - 12010894
14584