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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12003441_12004357_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12003441 - 12004357
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
TGTTTGCTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
GTGATCCTAATA
Flanking Amino Acid:
LAALHCRFGHYQQAELALQE
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
69.6
36.5
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
69.3
0.43
1
65.5
41.2
Minor 5ss
35.4
-1.7
2.9
42.8
39.3
Minor BPS
50.5
0.01
1.7
61.2
38.9

Associated Gene:

Gene:
ANAPC5
Ensembl Gene ID:
ENSAPLG00000003505
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003634
11996311 - 12010894
14584