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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12004549_12005437_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12004549 - 12005437
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TTTCAATTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TTTGTTTCAATT
Flanking Amino Acid:
LKFNPDFAEAHYLSYLNSLR
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.7
35.7
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
80.5
0.69
0.8
78.2
34.8
Minor 5ss
39.4
-1.2
3.3
58.2
40.5
Minor BPS
60.8
0.42
1.6
79.05
38

Associated Gene:

Gene:
ANAPC5
Ensembl Gene ID:
ENSAPLG00000003505
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003634
11996311 - 12010894
14584