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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12005540_12006910_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12005540 - 12006910
Intron Length:
1371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTAG
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
AGTTACTTAGCA
Flanking Amino Acid:
KQAEYFLSQQASLLKNDETK
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.7
34.9
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
88.1
0.86
0.7
80.5
36.7
Minor 5ss
45.6
-0.5
2.5
57.3
47.4
Minor BPS
61.1
0.35
1.8
72.2
39.1

Associated Gene:

Gene:
ANAPC5
Ensembl Gene ID:
ENSAPLG00000003505
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003634
11996311 - 12010894
14584