About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12006978_12008759_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12006978 - 12008759
Intron Length:
1782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATATAT
5'SS Class:
major
3'SS Sequence:
TGCTTTTTAGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTGTTTCTAACC
Flanking Amino Acid:
MEKEELDAPLREEEVSCSGP
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
0.9
75.7
29.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.2
0.68
0.9
77.3
35.6
Minor 5ss
34.2
-1.8
3.2
47.2
48.2
Minor BPS
63.4
0.4
1.6
74.22
36.8

Associated Gene:

Gene:
ANAPC5
Ensembl Gene ID:
ENSAPLG00000003505
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003634
11996311 - 12010894
14584