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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12009406_12009989_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12009406 - 12009989
Intron Length:
584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TAATGTTTAAAT
Flanking Amino Acid:
CPHLASSVHIRLKLMAEGEL
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.2
34.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
82.2
0.72
0.7
80.8
24.4
Minor 5ss
27.1
-2.6
3.2
35
41.6
Minor BPS
58.6
0.35
1.9
75.33
41

Associated Gene:

Gene:
ANAPC5
Ensembl Gene ID:
ENSAPLG00000003505
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003634
11996311 - 12010894
14584