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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12017653_12019061_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12017653 - 12019061
Intron Length:
1409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAA
U12 Branch Point Sequence:
TTTTTTTTTCCT
Flanking Amino Acid:
GLSFSVFRKKHVCCDCKKDF
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.8
86
23.7
Major BPS
58.2
0.2
1.1
49.1
38
Major PPT
80.9
0.7
0.7
80.5
24.7
Minor 5ss
35.6
-1.6
2.8
42.6
38.4
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
RNF34
Ensembl Gene ID:
ENSAPLG00000004405
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004543
12017449 - 12021824
4376