About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12019823_12020085_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12019823 - 12020085
Intron Length:
263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GGACATTTAAAA
Flanking Amino Acid:
NEEEESAEEQTPGLSRKRAR
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
76.1
0.59
1
72.5
42.4
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
48.2
-0.1
1.6
54.23
37

Associated Gene:

Gene:
RNF34
Ensembl Gene ID:
ENSAPLG00000004405
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004543
12017449 - 12021824
4376