About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12020288_12021636_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12020288 - 12021636
Intron Length:
1349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAGGTTGA
5'SS Class:
major
3'SS Sequence:
TGTTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
AGGGCCTGAATA
Flanking Amino Acid:
YRESEENHKTQGEKMQLNDN
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.4
65.9
42.7
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
84.2
0.77
0.8
81
36.6
Minor 5ss
39.6
-1.2
3.1
47.3
42.3
Minor BPS
53.8
0.12
1.6
59.38
40.6

Associated Gene:

Gene:
RNF34
Ensembl Gene ID:
ENSAPLG00000004405
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004543
12017449 - 12021824
4376