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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12025244_12025752_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12025244 - 12025752
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACAGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTACATTTATTT
Flanking Amino Acid:
RDSLTEINLSDCNKVTDQCL
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
60.6
44.4
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
89.2
0.88
0.8
88.3
28.9
Minor 5ss
38
-1.4
3.2
52.2
44.6
Minor BPS
51
0.11
1.7
71.24
39.8

Associated Gene:

Gene:
KDM2B
Ensembl Gene ID:
ENSAPLG00000004534
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004694
12025062 - 12041559
16498