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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12027477_12028913_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12027477 - 12028913
Intron Length:
1437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTGGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
GCCAAATTAAAG
Flanking Amino Acid:
CMRVCKTWNRWCCDKRLWTK
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
69.6
41.1
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
73.1
0.52
1
72.9
37.4
Minor 5ss
32.8
-2
3.1
39.9
40.3
Minor BPS
42
-0.7
1.9
40.62
42.5

Associated Gene:

Gene:
KDM2B
Ensembl Gene ID:
ENSAPLG00000004534
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004694
12025062 - 12041559
16498