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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12032521_12033063_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12032521 - 12033063
Intron Length:
543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGGCGTACAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TTTGGCGTACAA
Flanking Amino Acid:
KCNHAGKTGKQKRGPGFKYA
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
83
23.9
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
56
0.14
1.2
53.8
45.1
Minor 5ss
40
-1.1
2.9
49.4
41.3
Minor BPS
40.5
-0.7
2.6
59.76
46.2

Associated Gene:

Gene:
KDM2B
Ensembl Gene ID:
ENSAPLG00000004534
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004694
12025062 - 12041559
16498