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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12041533_12041569_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12041533 - 12041569
Intron Length:
37

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCCTGGCAG
5'SS Class:
major
3'SS Sequence:
CATTATGAGGCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATGAG
U12 Branch Point Sequence:
CAGTCCTGCATT
Flanking Amino Acid:
FCKDMKKFGGCIAVSPVLPH
Intron Amino Acid Position:
631

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.2
0.24
1.3
43.3
44
Major BPS
60.7
0.27
1.6
59.7
46.7
Major PPT
59
0.2
1.2
54.5
44.4
Minor 5ss
20.8
-3.4
3.7
21
37.4
Minor BPS
49.1
0.01
1.9
65.64
45.2

Associated Gene:

Gene:
KDM2B
Ensembl Gene ID:
ENSAPLG00000004534
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023088
12037852 - 12125687
87836