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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12041750_12060299_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12041750 - 12060299
Intron Length:
18550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGAGA
5'SS Class:
major
3'SS Sequence:
CTGACTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TGTGTCTGACTC
Flanking Amino Acid:
VVSWPKKTPKNRAVGRPKGK
Intron Amino Acid Position:
571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
76.9
0.61
0.9
73.2
37.1
Minor 5ss
31.7
-2.1
3.1
40.5
45.2
Minor BPS
47.5
-0.2
1.8
59.08
40.5

Associated Gene:

Gene:
KDM2B
Ensembl Gene ID:
ENSAPLG00000004534
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023088
12037852 - 12125687
87836