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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12068287_12076140_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12068287 - 12076140
Intron Length:
7854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTACCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTATAT
U12 Branch Point Sequence:
CTTTTTCTACCT
Flanking Amino Acid:
KEYQRESMLIDARRKHSLDS
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
57.9
0.2
1.1
55
40.4
Major PPT
84.3
0.77
0.8
81.3
30.4
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
51.6
0.13
1.9
75.41
41.9

Associated Gene:

Gene:
KDM2B
Ensembl Gene ID:
ENSAPLG00000004534
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023088
12037852 - 12125687
87836