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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12082741_12093942_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
12082741 - 12093942
Intron Length:
11202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCGTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTCCCTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
GCATTCTCAGTT
Flanking Amino Acid:
KQGYTFFIPSGWIHAVYTPV
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.2
72.1
39.9
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
81.5
0.71
0.7
74.2
31
Minor 5ss
65.1
0.51
2.7
81.8
38.5
Minor BPS
47.8
-0
1.7
61.4
42.7

Associated Gene:

Gene:
KDM2B
Ensembl Gene ID:
ENSAPLG00000004534
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023088
12037852 - 12125687
87836