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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12095074_12104157_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12095074 - 12104157
Intron Length:
9084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTCAT
U12 Branch Point Sequence:
ACTGATTCATTT
Flanking Amino Acid:
ISEMKYPKVKKYCLMSVKGC
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
74.4
0.61
1.2
77.7
37.1
Major PPT
79.8
0.67
0.9
76.2
37.8
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
41.5
-0.5
1.9
54.82
41.8

Associated Gene:

Gene:
KDM2B
Ensembl Gene ID:
ENSAPLG00000004534
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023088
12037852 - 12125687
87836