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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12107296_12122137_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12107296 - 12122137
Intron Length:
14842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TACCCATTGAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
TTGTTGAGAATT
Flanking Amino Acid:
IFRNKDGLGINEAKTNVQEC
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
81.2
26.2
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
54.7
0.11
1.2
55.7
38
Minor 5ss
42.2
-0.9
2.8
52.8
38.5
Minor BPS
44.9
-0.3
2.3
69.04
42.3

Associated Gene:

Gene:
KDM2B
Ensembl Gene ID:
ENSAPLG00000004534
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023088
12037852 - 12125687
87836