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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12122217_12124698_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12122217 - 12124698
Intron Length:
2482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGCCC
5'SS Class:
major
3'SS Sequence:
CTTATCCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCTTTTTAATT
Flanking Amino Acid:
GDFVRAMDGRDFTFEYVQRE
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
63.1
39.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
71.6
0.49
0.9
65.5
35.1
Minor 5ss
30.9
-2.2
3.4
42.7
44.4
Minor BPS
78
0.96
1
86.64
33.8

Associated Gene:

Gene:
KDM2B
Ensembl Gene ID:
ENSAPLG00000004534
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023088
12037852 - 12125687
87836