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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12131239_12141748_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12131239 - 12141748
Intron Length:
10510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
CCTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GTAATAATAATT
Flanking Amino Acid:
TSALLSGFAMVAMVEVQLDA
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
62
37
Major BPS
80
0.75
1
78.6
31
Major PPT
89.8
0.89
0.6
88
22
Minor 5ss
32.3
-2
3.3
39.1
40.7
Minor BPS
46.5
-0.1
1.8
64.63
39.2

Associated Gene:

Gene:
ORAI1
Ensembl Gene ID:
ENSAPLG00000004913
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005061
12131125 - 12142315
11191