About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12146190_12146558_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12146190 - 12146558
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTACTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTTTACATAATT
Flanking Amino Acid:
PAPTQYPIPKIELADPDAVL
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
86.4
28.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
80.3
0.68
0.8
81.3
29.6
Minor 5ss
38.4
-1.3
2.7
52.9
43.7
Minor BPS
62.3
0.46
1.8
81.94
39.5

Associated Gene:

Gene:
MORN3
Ensembl Gene ID:
ENSAPLG00000004938
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005099
12146121 - 12151786
5666