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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12146744_12149130_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12146744 - 12149130
Intron Length:
2387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TATTGAATTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
ATGTATTGAATT
Flanking Amino Acid:
QPGGQGMLCLSNDNRYEGGW
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.9
31.3
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
75
0.56
1
67.5
42.3
Minor 5ss
39.4
-1.2
2.7
51.9
37.5
Minor BPS
55.7
0.26
1.6
72.11
39.1

Associated Gene:

Gene:
MORN3
Ensembl Gene ID:
ENSAPLG00000004938
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005099
12146121 - 12151786
5666