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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12149291_12150983_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12149291 - 12150983
Intron Length:
1693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
CTGCTGTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
AACTGCTTACCT
Flanking Amino Acid:
TGWWKNDKKCGYGTLFYPSG
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.1
69.1
41.9
Major BPS
72
0.55
1
71.8
31.4
Major PPT
65.6
0.35
1
59.7
40.6
Minor 5ss
38.3
-1.3
3.3
50
46.2
Minor BPS
53
0.17
2.1
71.2
45.6

Associated Gene:

Gene:
MORN3
Ensembl Gene ID:
ENSAPLG00000004938
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005099
12146121 - 12151786
5666