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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_12162499_12163470_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12162499 - 12163470
Intron Length:
972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
CAAGACTTAATG
Flanking Amino Acid:
DMEAYLPKKNGLYLNLVLGN
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
78.8
35.5
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
89.2
0.88
0.7
81.2
36.5
Minor 5ss
34.9
-1.7
3.2
42.4
44.3
Minor BPS
49.4
-0.1
1.7
50.21
43.8

Associated Gene:

Gene:
TMEM120B
Ensembl Gene ID:
ENSAPLG00000004954
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005120
12158404 - 12165426
7023